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Human Blood Plasma Proteins: Structure and Function


Description: Human Blood Plasma Proteins gives an overview of the proteins found in human blood plasma, with special emphasis on their structure and function and relationship to pathological states and disease. Topics covered include:

-introduction to blood components and blood plasma proteins
-blood plasma protein domains, motifs and repeats
-blood plasma protein families and posttranslational modifications
-blood coagulation and fibrinolysis
-the complement system
-the immune system
-enzymes
-inhibitors
-lipoproteins
-hormones
-cytokines and growth factors
-transport and storage

The information of each protein discussed in this book in some detail is summarised at the end of each chapter in a Data Sheet, where one can find the most important data of each protein at one glance. Full cross-referencing to protein databases is given and many of the proteins discussed are accompanied by their 3D structure.

Attractively presented in full colour, Human Blood Plasma Proteins is an essential atlas of this proteome for anyone working in biochemistry, protein chemistry and proteomics, structural biology, and medicine.


Contents: Contents

Preface

1 Introduction
References

Part I

2 Blood Components
2.1 Introduction
2.2 Short History
2.3 Blood Components
2.3.1 Blood cells
2.3.2 Blood plasma
2.3.3 The blood group system
References
Data Sheet

3 Blood Plasma Proteins
3.1 Introduction
3.2 Short History
3.3 Classification of Blood Plasma Proteins
References

Part II

4 Domains, Motifs and Repeats
4.1 Introduction
4.2 The Epidermal Growth Factor (EGF)-Like Domain
4.3 The Kringle Domain
4.4 The g-Carboxyglutamic Acid-Rich (Gla) Domain
4.5 The PAN/Apple Domain
4.6 The Sushi/CCP/SCR Domain
4.7 The Fibronectin Type I, the Fibronectin Type II Collagen-Binding and the Fibronectin Type III Domains
4.8 The Coagulation Factors 5/8 Type C Domain (FA58C)
4.9 The Thrombospondin Type I Repeat (TSP1)
4.10 The VWFA, VWFC and VWFD Domains
4.11 The Cystatin-Like Domain
4.12 The LDL-Receptor Class A (LDLRA) and Class B (LDLRB) Domains
4.13 The C-Terminal Cystine Knot (CTCK) Structure
4.14 The Anaphylatoxin Domain
4.15 The CUB Domain
4.16 The NTR Domain
4.17 The C-Type Lectin (CTL) Domain
4.18 The Ig-Like Domain
References

5 Protein Families
5.1 Introduction
5.2 Serine Proteases: The Trypsin Family
5.3 Serine Protease Inhibitors (Serpins)
5.4 The a2-Macroglobulin Family
5.5 The Serum Albumin Family
5.6 The Pancreatic Trypsin Inhibitor (Kunitz) Family Signature
5.7 The Kazal Serine Protease Inhibitors Family Signature
5.8 The Multicopper Oxidase Family
5.9 The Lipocalin Family
5.10 The Globin Family
5.11 The Glucagon/Gastric Inhibitory Polypeptide (GIP)/Secretin/Vasoactive Intestinal Peptide (VIP) Family
5.12 The Glycoprotein Hormone Family
5.13 Membrane Attack Complex Components/Perforin Signature (The Complement C6/C7/C8/C9 Family)
5.14 The Lipase Family
5.15 Hormone Families and Signatures
5.15.1 The erythropoietin/thrombopoietin signature
5.15.2 The corticotropin-releasing factor family
5.15.3 The gonadotropin-releasing hormone signature
5.15.4 The calcitonin/CGRP/IAPP family
5.15.5 The gastrin/cholecystokinin family
5.15.6 The insulin family
5.16 Growth Factor Families
5.16.1 The platelet-derived growth factor family
5.16.2 The transforming growth factor-b family
5.17 Cytokine Families
5.17.1 The tumor necrosis factor family
5.17.2 The interferon a, b and d family
5.18 Interleukin Families and Signatures
5.18.1 The interleukin-1 signature
5.18.2 The interleukin-2 signature
5.18.3 The interleukin-4/-13 signature
5.18.4 The interleukin-6/granulocyte colony-stimulating factor/myelomonocytic growth factor family
5.18.5 The interleukin-7 and -9 signature
5.18.6 Interleukin-10 family
5.19 The Small Cytokine (Intercrine/Chemokine) Family and Signature
References

6 Posttranslational Modifications
6.1 Introduction
6.2 Databases for Posttranslational Modifications (PTMs)
6.3 Disulfide Bridges
6.4 Glycosylation
6.5 Phosphorylation
6.5.1 Ser/Thr phosphorylation sites
6.5.2 Tyr phosphorylation site
6.6 Hydroxylation
6.6.1 Aspartic acid and asparagine hydroxylation site
6.7 Sulfation
6.8 Acylation and Alkylation
6.9 Amidation
6.10 Carboxylation
6.11 Crosslinks
6.11.1 The isoglutamyl cysteine thioester bond
6.11.2 The isopeptide bond
References

Part III

7 Blood Coagulation and Fibrinolysis
7.1 Introduction
7.1.1 Definition of haemostasis
7.2 Primary Haemostasis
7.3 The Coagulation Cascade
7.4 The Fibrinolytic System
7.5 The Regulation of Blood Coagulation and Fibrinolysis
7.6 The Kinin and Angiotensin/Renin Systems
References
Data Sheets

8 The Complement System
8.1 Introduction
8.1.1 Nomenclature
8.2 The Classical Pathway
8.2.1 The anaphylatoxins C3a, C4a and C5a
8.3 The Alternative Pathway
8.4 The Terminal Components of the Complement System
8.5 Components of Complement Activation
8.6 Regulation of the Complement System
References
Data Sheets

9 The Immune System
9.1 Introduction
9.2 Immunoglobulins
9.3 Antibody Diversity
9.4 Major Histocompatibility Complex (MHC) Proteins
9.5 Innate Immune System
9.6 Other Proteins
References
Data Sheets

10 Enzymes
10.1 Introduction
10.2 EC 1: Oxidoreductases
10.2.1 EC 1.11: peroxidases
10.3 EC 2: Transferases
10.3.1 EC 2.3: acyltransferases
10.3.2 EC 2.6: transfer of nitrogenous group
10.3.3 EC 2.7: transfer of phosphorous-containing groups
10.4 EC 3: Hydrolases
10.4.1 EC 3.1: esterases (ester bond)
10.4.2 EC 3.2: glycosylases (sugars)
10.4.3 EC 3.4: peptidases (peptide bonds)
EC 3.4.17: metallocarboxypeptidases
EC 3.4.21: serine endopeptidases (serine proteases)
EC 3.4.22: cysteine endopeptidases (cysteine proteases)
EC 3.4.23: aspartic endopeptidases (aspartic proteases)
10.5 EC 5: Isomerases
10.5.1 EC 5.3: oxidoreductases (intramolecular)
References
Data Sheets

11 Inhibitors
11.1 Introduction
11.2 Serine Protease Inhibitors (Serpins)
11.2.1 Introduction
11.2.2 Structural properties
11.2.3 Inhibitory reaction
11.3 Blood Coagulation and Fibrinolysis
11.3.1 Blood coagulation
11.3.2 Fibrinolysis
11.4 The Complement System
11.5 General Inhibitors
11.6 Other Serpins
11.7 Other Inhibitors
References
Data Sheets

12 Lipoproteins
12.1 Introduction
12.2 Enzymes in Lipoprotein Metabolism
12.3 Apolipoproteins
12.4 LDL and VLDL Receptors
12.5 Serum Amyloid A Proteins
References
Data Sheets

13 Hormones
13.1 Introduction
13.2 Pancreatic Hormones
13.3 Gastrointestinal Hormones
13.4 Calcium-Related Hormones
13.5 Hormone-Releasing Factors, Their Trophic Hormones and Related Hormones
13.6 Vasopressin and Oxytocin
13.7 Natural Opioid Peptides
13.8 Vasoactive Peptides
13.9 Erythropoietin and Thrombopoietin
13.10 Others
13.10.1 Adiponectin
13.10.2 Islet amyloid polypeptide
References
Data Sheets

14 Cytokines and Growth Factors
14.1 Introduction
14.2 Interleukin Families
14.2.1 Interleukin-1 family
14.2.2 Interleukin-2 family
14.2.3 Interleukin-3 family
14.2.4 Interleukin-4/interleukin-13 family
14.2.5 Interleukin-5 family
14.2.6 Interleukin-6 family
14.2.7 Interleukin-7/interleukin-9 family
14.2.8 Interleukin-10 family
14.2.9 Interleukin-15 family
14.2.10 Granulocyte–macrophage colony-stimulating factor family
14.3 Tumour Necrosis Factor Family
14.4 The Interferon Family
14.4.1 The interferon a/b family
14.4.2 The interferon g family
14.5 Chemokines
14.5.1 The intercrine a/chemokine CxC family
14.5.2 The intercrine b/chemokine CC family
14.6 The Platelet-Derived Growth Factor/Vascular Endothelial Growth Factor Family
14.7 Transforming Growth Factor-b Family
14.8 Miscellaneous
14.8.1 The nerve growth factor-b family
14.8.2 Epidermal growth factor
14.8.3 Insulin-like growth factor binding proteins
References
Data Sheets

15 Transport and Storage
15.1 Introduction
15.2 The Serum Albumin Family
15.3 The Globin Family
15.3.1 Haptoglobin
15.4 Iron Transport and Storage
15.4.1 Iron oxidation: ceruloplasmin
15.4.2 Iron transport proteins: transferrins
15.4.3 Iron storage
15.4.4 Heme transport and iron recovery: hemopexin
15.5 Transport of Hormones, Steroids and Vitamins
15.5.1 Hormone transport proteins
15.5.2 Steroid transport proteins
15.5.3 Vitamin A transport protein
15.6 Other Transport Proteins in Plasma
15.6.1 Selenoproteins
References
Data Sheets

16 Additional Proteins
16.1 Introduction
16.2 Additional Blood Plasma Proteins
Data Sheets

Appendix

Glossary

Index




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