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Microbiome Sequencing Services Market - Global Forecast 2025-2032

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    Report

  • 186 Pages
  • October 2025
  • Region: Global
  • 360iResearch™
  • ID: 4968642
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The microbiome sequencing services market is driving transformative advances across multiple industries, equipping senior leaders with cutting-edge sequencing technologies and analytics to propel research, productivity, and informed operational decisions.

Market Snapshot: Microbiome Sequencing Services Market

The global microbiome sequencing services market is experiencing robust and sustained expansion, with its value expected to rise from USD 2.04 billion in 2024 to USD 2.36 billion in 2025 and reaching USD 6.38 billion by 2032. This impressive growth reflects increasing investment in next-generation sequencing technology and a broad adoption of advanced analytics across diverse sectors. Life sciences, agriculture, and environmental fields are harnessing these capabilities to improve research accuracy, rapidly respond to changing regulations, and address evolving market needs. As analytical solutions become more sophisticated and competitive strategies shift, organizations worldwide are able to enhance workflows and achieve greater operational resilience in the microbiome sequencing services market.

Scope & Segmentation

This comprehensive market report delivers clarity for senior decision-makers, offering exhaustive coverage of the critical segmentation and strategic options within the microbiome sequencing services market. The intelligence provided is designed to help organizations make informed decisions about adopting or expanding their use of sequencing platforms to boost research performance and operational flexibility.

  • Sample Types: Includes analysis of a wide range of specimen origins such as fecal, oral, skin, soil, and water. These support crucial applications across diagnostics, disease surveillance, agriculture productivity, and environmental monitoring.
  • Technologies: Covers specialized methods like 16S rRNA and internal transcribed spacer sequencing for accurate microbial identification. Explores comprehensive strategies such as shotgun metagenomics and metatranscriptomics, enabling thorough characterization of microbial communities for commercial and clinical applications.
  • Applications: Features usage spanning clinical diagnostics, therapeutic monitoring, disease tracking, agricultural optimization, biosurveillance, and pharmaceutical innovation—each crucial for regulatory compliance and operational excellence.
  • End Users: Incorporates academic research institutions, clinical laboratories, genomics companies, contract research organizations, and pharmaceutical manufacturers using these services to broaden research initiatives and accelerate product development.
  • Regions: Highlights key geographic markets in the Americas, Europe, Middle East & Africa, and Asia-Pacific, each defined by unique regulatory conditions, commercialization pathways, and market drivers shaping successful implementation.
  • Leading Companies: Profiles influential industry leaders including Illumina, Thermo Fisher Scientific, QIAGEN, F. Hoffmann-La Roche, Danaher, Eurofins Scientific, BGI Genomics, Novogene, Adaptive Biotechnologies, and WuXi AppTec, each shaping competitive dynamics and technology advancement.

Key Takeaways for Senior Decision-Makers

  • Expansion of sequencing platforms empowers organizations to achieve more comprehensive microbial analysis, smoothly integrating these advances within broader research pipelines and product lifecycles.
  • Adoption of emerging single-cell and long-read sequencing enables greater precision in diagnostics and supports tailored solutions in sectors such as agriculture and environmental management.
  • Implementation of cloud-based bioinformatics and AI-powered analytics strengthens the speed and accuracy of data interpretation, allowing scalable project management across a range of operational demands.
  • Greater industry collaboration promotes wider access to advanced sequencing services and supports organizational readiness to meet new compliance requirements and scientific standards.
  • Effective supply chain management and strategic resource allocation ensure quality and continuity in service delivery, equipping organizations to manage regulatory changes and shifting commercial landscapes.

Tariff Impact: Strategic Response to 2025 U.S. Tariffs

With pending U.S. tariffs on laboratory equipment and consumables, service providers in this sector are reinforcing domestic supply chains and expanding international sourcing options. Building robust supplier partnerships and deploying modern project management tools is now essential for maintaining operational continuity. Collaborative sector-wide approaches are becoming critical for navigating regulatory complexity and securing the stability needed to adapt to evolving market realities.

Methodology & Data Sources

The findings in this report employ a multi-source approach that integrates expert interviews, firsthand insights from market stakeholders, peer-reviewed scientific literature, patent reviews, and analysis of company documentation. This thorough methodology ensures that senior leaders receive reliable, actionable intelligence tailored to strategic decision-making.

Why This Report Matters

  • Empowers organizations to maximize investment outcomes, efficiently resolve operational challenges, and establish optimal strategic positions within the microbiome sequencing services sector.
  • Delivers current intelligence on technological advancements and emerging industry trends, supporting proactive choices for continued competitiveness and operational strength.
  • Enables leaders to pinpoint new growth opportunities and interpret regulatory developments, ensuring sustainable expansion and effective market navigation.

Conclusion

This report provides senior leadership with the comprehensive insights needed to guide confident decisions and differentiate organizational strategy as the microbiome sequencing services market progresses.

 

Additional Product Information:

  • Purchase of this report includes 1 year online access with quarterly updates.
  • This report can be updated on request. Please contact our Customer Experience team using the Ask a Question widget on our website.

Table of Contents

1. Preface
1.1. Objectives of the Study
1.2. Market Segmentation & Coverage
1.3. Years Considered for the Study
1.4. Currency & Pricing
1.5. Language
1.6. Stakeholders
2. Research Methodology
3. Executive Summary
4. Market Overview
5. Market Insights
5.1. Integration of artificial intelligence with shotgun metagenomics for predictive gut health analytics
5.2. Development of targeted probiotics informed by high-resolution microbial strain-level sequencing data
5.3. Adoption of real-time nanopore sequencing platforms for onsite microbiome profiling in clinical settings
5.4. Integration of multiomics data from metatranscriptomics and metabolomics for comprehensive microbiome insights
5.5. Emergence of standardized bioinformatics pipelines to reduce variability in microbiome sequencing analysis
5.6. Growing demand for fecal microbiota transplantation screening using comprehensive shotgun metagenomic assays
5.7. Strategic partnerships between sequencing providers and pharmaceutical companies for microbiome-based drug discovery
5.8. Regulatory frameworks evolving to address data privacy and ethical concerns in clinical microbiome sequencing studies
6. Cumulative Impact of United States Tariffs 2025
7. Cumulative Impact of Artificial Intelligence 2025
8. Microbiome Sequencing Services Market, by Sample Type
8.1. Fecal
8.2. Oral
8.3. Skin
8.4. Soil
8.5. Water
9. Microbiome Sequencing Services Market, by Technology
9.1. Amplicon Sequencing
9.1.1. 16S Rrna Sequencing
9.1.2. Internal Transcribed Spacer Sequencing
9.2. Metatranscriptomic Sequencing
9.3. Shotgun Metagenomic Sequencing
10. Microbiome Sequencing Services Market, by Application
10.1. Agricultural & Animal Husbandry
10.1.1. Crop Quality Monitoring
10.1.2. Livestock Health Monitoring
10.2. Clinical Diagnostics
10.2.1. Gastrointestinal Disorder Diagnosis
10.2.2. Infectious Disease Diagnostics
10.3. Consumer Genomics
10.3.1. At-Home Testing
10.3.2. Clinic-Based Testing
10.4. Environmental Monitoring
10.4.1. Soil Health Monitoring
10.4.2. Water Quality Monitoring
10.5. Pharmaceutical R&D
10.5.1. Drug Discovery
10.5.2. Microbiome Therapeutics Development
11. Microbiome Sequencing Services Market, by End User
11.1. Academic & Research Institutes
11.2. Clinical Diagnostic Laboratories
11.3. Consumer Genomics Companies
11.4. Contract Research Organizations
11.5. Pharmaceutical & Biopharmaceutical Companies
12. Microbiome Sequencing Services Market, by Region
12.1. Americas
12.1.1. North America
12.1.2. Latin America
12.2. Europe, Middle East & Africa
12.2.1. Europe
12.2.2. Middle East
12.2.3. Africa
12.3. Asia-Pacific
13. Microbiome Sequencing Services Market, by Group
13.1. ASEAN
13.2. GCC
13.3. European Union
13.4. BRICS
13.5. G7
13.6. NATO
14. Microbiome Sequencing Services Market, by Country
14.1. United States
14.2. Canada
14.3. Mexico
14.4. Brazil
14.5. United Kingdom
14.6. Germany
14.7. France
14.8. Russia
14.9. Italy
14.10. Spain
14.11. China
14.12. India
14.13. Japan
14.14. Australia
14.15. South Korea
15. Competitive Landscape
15.1. Market Share Analysis, 2024
15.2. FPNV Positioning Matrix, 2024
15.3. Competitive Analysis
15.3.1. Illumina, Inc.
15.3.2. Thermo Fisher Scientific Inc.
15.3.3. QIAGEN N.V.
15.3.4. F. Hoffmann-La Roche AG
15.3.5. Danaher Corporation
15.3.6. Eurofins Scientific SE
15.3.7. BGI Genomics Co., Ltd.
15.3.8. Novogene Co., Ltd.
15.3.9. Adaptive Biotechnologies Corp.
15.3.10. WuXi AppTec Co., Ltd.

Companies Mentioned

The companies profiled in this Microbiome Sequencing Services market report include:
  • Illumina, Inc.
  • Thermo Fisher Scientific Inc.
  • QIAGEN N.V.
  • F. Hoffmann-La Roche AG
  • Danaher Corporation
  • Eurofins Scientific SE
  • BGI Genomics Co., Ltd.
  • Novogene Co., Ltd.
  • Adaptive Biotechnologies Corp.
  • WuXi AppTec Co., Ltd.

Table Information