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North America Microbiome Sample Preparation Technology Market Size, Share & Trends Analysis Report by Product (Consumables, Instruments), Workflow, Application, Disease, End-use, and Region with Growth Forecasts, 2025-2030

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    Report

  • 120 Pages
  • May 2025
  • Region: North America
  • Grand View Research
  • ID: 6098128
The North America Microbiome Sample Preparation Technology Market was valued at USD 106.0 million in 2024, and is projected to reach USD 152.1 million by 2030, rising at a CAGR of 6.10%. The increasing adoption of precision medicine across clinical and research settings accelerates the demand for microbiome-based insights. Healthcare providers and researchers use microbiome data to design targeted therapies, particularly for chronic illnesses and metabolic disorders. This trend toward personalized treatment strategies boosts the need for accurate and efficient sample preparation technologies. High-throughput sequencing workflows depend on precise sample handling to maintain data integrity, driving the uptake of advanced preparation kits and automation tools. A strong focus on reproducibility and quality in scientific research further amplifies the demand for standardized processing methods. As a result, sample preparation technologies are becoming essential to the growing microbiome research ecosystem.

Another significant driver is the expanding application of microbiome studies in the pharmaceutical and biotechnology sectors. Companies are investing in microbiome-based drug development, focusing on therapies for gastrointestinal, neurological, and autoimmune conditions. To support these efforts, firms require scalable and consistent sample preparation platforms to handle large volumes of complex biological specimens. The rise in clinical trials involving microbiome interventions intensifies the need for robust technologies that minimize variability and contamination. Additionally, partnerships between research institutes and industry players accelerate innovation in preparation tools and protocols. These collaborations are enhancing the overall efficiency and accuracy of microbiome analysis workflows.

Technological advancements in automation and workflow integration are further contributing to market expansion. Laboratories are moving toward fully integrated systems that combine extraction, purification, and quality control in a single platform. These solutions save time, reduce manual errors, and improve throughput, making them highly attractive to academic and commercial labs. As data complexity increases, there is a growing requirement for software and instruments that ensure consistency from sample to sequencing. The emergence of user-friendly, high-performance systems is supporting wider adoption among non-specialist users. This trend enables more institutions to conduct in-house microbiome research, driving sustained demand for sample preparation technologies across North America.

North America Microbiome Sample Preparation Technology Market Report Highlights

  • Based on product, the consumables segment is expected to witness the fastest growth at a CAGR of 6.23% during the forecast period. This is due to the increasing demand for high-throughput and accurate microbiome analysis. Expansion of laboratory networks across the U.S. and Canada has further supported the rising consumption of single-use preparation products.
  • Based on workflow, the sample extraction/isolation segment dominated the market and accounted for the largest revenue share of 21.7% in 2024, driven by the critical need for high-quality microbial DNA and RNA in downstream applications. Strong presence of key players offering advanced extraction tools has reinforced segment leadership in the region.
  • Based on application, the DNA sequencing segment dominated the market and accounted for the largest revenue share in 2024, driven by the rapid adoption of next-generation sequencing platforms in microbiome research.
  • Based on disease, the gastrointestinal disorders segment dominated the market. It accounted for the largest revenue share in 2024, driven by the growing recognition of the gut microbiome's role in chronic disease progression. In North America, healthcare providers and research institutes invest heavily in understanding gut microbial imbalance.
  • Based on end use, the diagnostic labs segment held the largest revenue share in 2024, driven by the expansion of clinical microbiome testing services across North America. Demand for accurate microbial profiling in disease diagnosis has prompted labs to adopt specialized sample preparation technologies.

This report addresses:

  • Market intelligence to enable effective decision-making
  • Market estimates and forecasts from 2018 to 2030
  • Growth opportunities and trend analyses
  • Segment and regional revenue forecasts for market assessment
  • Competition strategy and market share analysis
  • Product innovation listings for you to stay ahead of the curve

Why Should You Buy This Report?

  • Comprehensive Market Analysis: Gain detailed insights into the market across major regions and segments.
  • Competitive Landscape: Explore the market presence of key players.
  • Future Trends: Discover the pivotal trends and drivers shaping the future of the market.
  • Actionable Recommendations: Utilize insights to uncover new revenue streams and guide strategic business decisions.

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Table of Contents

Chapter 1. Methodology and Scope
1.1. Market Segmentation & Scope
1.2. Segment Definitions
1.2.1. Product
1.2.2. Workflow
1.2.3. Application
1.2.4. Disease
1.2.5. End Use
1.3. Research Methodology
1.4. Information Procurement
1.5. Information or Data Analysis
1.5.1. Data analysis models
1.6. Market Formulation & Validation
1.7. List of Secondary Sources
1.8. List of Primary Sources
1.9. Objectives
Chapter 2. Executive Summary
2.1. Market Outlook
2.2. Segment Outlook
2.3. Competitive Insights
Chapter 3. North America Microbiome Sample Preparation Technology Market Variables & Trends
3.1. Market Lineage Outlook
3.1.1. Parent market outlook
3.1.2. Related/ancillary market outlook
3.2. Market Dynamics
3.2.1. Market driver analysis
3.2.1.1. Advancements in Microbiome-Based Therapeutics and Research
3.2.1.2. Expanding Use of Multi-Omics Approaches
3.2.1.3. Rising Demand for Precision Medicine
3.2.1.4. Adoption of Automation & AI
3.2.2. Market restraint analysis
3.2.2.1. Lack of Standardization in Sample Preparation Protocols
3.2.2.2. High Cost of Instruments and Limited Skilled Workforce
3.3. North America Microbiome Sample Preparation Technology Market Analysis Tools
3.3.1. Industry Analysis - Porter’s
3.3.2. PESTEL Analysis
3.3.3. COVID-19 Impact Analysis
Chapter 4. North America Microbiome Sample Preparation Technology Market: Product Estimates & Trend Analysis
4.1. Product Segment Dashboard
4.2. North America Microbiome Sample Preparation Technology Market Product Movement Analysis
4.3. North America Microbiome Sample Preparation Technology Market Size & Trend Analysis, by Product, 2018 to 2030 (USD Million)
4.4. Consumables
4.4.1. Consumables Market Size & Forecasts and Trend Analyses, 2018 to 2030 (USD Million)
4.4.2. Purification/Extraction Kits
4.4.2.1. Purification/Extraction Kits Market Size & Forecasts and Trend Analyses, 2018 to 2030 (USD Million)
4.4.3. Library prep kits
4.4.3.1. Library prep kits Market Size & Forecasts and Trend Analyses, 2018 to 2030 (USD Million)
4.4.3.2. DNA Library Preparation Kits
4.4.3.2.1. DNA Library Preparation Kits Market Size & Forecasts and Trend Analyses, 2018 to 2030 (USD Million)
4.4.3.3. RNA Library Preparation Kits
4.4.3.3.1. RNA Library Preparation Kits Market Size & Forecasts and Trend Analyses, 2018 to 2030 (USD Million)
4.4.3.4. Library Quantitation & Amplification kits
4.4.3.4.1. Library Quantitation & Amplification kits Market Size & Forecasts and Trend Analyses, 2018 to 2030 (USD Million)
4.4.3.5. Clean-up and Selection Kits
4.4.3.5.1. Clean-up and Selection Kits Market Size & Forecasts and Trend Analyses, 2018 to 2030 (USD Million)
4.4.3.6. Microbiome DNA Enrichment
4.4.3.6.1. Microbiome DNA Enrichment Market Size & Forecasts and Trend Analyses, 2018 to 2030 (USD Million)
4.4.3.7. Others
4.4.3.7.1. Others Market Size & Forecasts and Trend Analyses, 2018 to 2030 (USD Million)
4.5. Instruments
4.5.1. Instruments Market Size & Forecasts and Trend Analyses, 2018 to 2030 (USD Million)
4.5.2. Workstation
4.5.2.1. Workstation Market Size & Forecasts and Trend Analyses, 2018 to 2030 (USD Million)
4.5.3. Extraction System
4.5.3.1. Extraction System Market Size & Forecasts and Trend Analyses, 2018 to 2030 (USD Million)
4.5.4. Liquid Handling Instrument
4.5.4.1. Liquid Handling Instrument Market Size & Forecasts and Trend Analyses, 2018 to 2030 (USD Million)
4.5.5. Other Sample Preparation Instruments
4.5.5.1. Other Sample Preparation Instruments Market Size & Forecasts and Trend Analyses, 2018 to 2030 (USD Million)
Chapter 5. North America Microbiome Sample Preparation Technology Market: Workflow Estimates & Trend Analysis
5.1. Workflow Segment Dashboard
5.2. North America Microbiome Sample Preparation Technology Market Workflow Movement Analysis
5.3. North America Microbiome Sample Preparation Technology Market Size & Trend Analysis, by Workflow, 2018 to 2030 (USD Million)
5.4. Sample Extraction/Isolation
5.4.1. Sample Extraction/Isolation Market Size & Forecasts and Trend Analyses, 2018 to 2030, (USD Million)
5.5. Library Preparation
5.5.1. Library Preparation Market Size & Forecasts and Trend Analyses, 2018 to 2030, (USD Million)
5.6. Sample Quantification
5.6.1. Sample Quantification Market Size & Forecasts and Trend Analyses, 2018 to 2030, (USD Million)
5.7. Fragmentation
5.7.1. Fragmentation Market Size & Forecasts and Trend Analyses, 2018 to 2030, (USD Million)
5.8. Target Enrichment
5.8.1. Target Enrichment Market Size & Forecasts and Trend Analyses, 2018 to 2030, (USD Million)
5.9. Quality Control
5.9.1. Quality Control Market Size & Forecasts and Trend Analyses, 2018 to 2030, (USD Million)
5.10. Pooling
5.10.1. Pooling Market Size & Forecasts and Trend Analyses, 2018 to 2030, (USD Million)
5.11. Library Quantification
5.11.1. Library Quantification Market Size & Forecasts and Trend Analyses, 2018 to 2030, (USD Million)
Chapter 6. North America Microbiome Sample Preparation Technology Market: Application Estimates & Trend Analysis
6.1. Application Segment Dashboard
6.2. North America Microbiome Sample Preparation Technology Market Application Movement Analysis
6.3. North America Microbiome Sample Preparation Technology Market Size & Trend Analysis, by Application, 2018 to 2030 (USD Million)
6.4. DNA Sequencing
6.4.1. DNA Sequencing Market Size & Forecasts and Trend Analyses, 2018 to 2030, (USD Million)
6.5. RNA Sequencing
6.5.1. RNA Sequencing Market Size & Forecasts and Trend Analyses, 2018 to 2030, (USD Million)
6.6. Methylation Sequencing
6.6.1. Methylation Sequencing Market Size & Forecasts and Trend Analyses, 2018 to 2030, (USD Million)
6.7. Single Cell Sequencing
6.7.1. Single Cell Sequencing Market Size & Forecasts and Trend Analyses, 2018 to 2030, (USD Million)
6.8. Whole-Genome Sequencing
6.8.1. Whole-Genome Sequencing Market Size & Forecasts and Trend Analyses, 2018 to 2030, (USD Million)
6.9. Metagenomics
6.9.1. Metagenomics Market Size & Forecasts and Trend Analyses, 2018 to 2030, (USD Million)
6.10. Others
6.10.1. Others Market Size & Forecasts and Trend Analyses, 2018 to 2030, (USD Million)
Chapter 7. North America Microbiome Sample Preparation Technology Market: Disease Estimates & Trend Analysis
7.1. Disease Segment Dashboard
7.2. North America Microbiome Sample Preparation Technology Market Disease Movement Analysis
7.3. North America Microbiome Sample Preparation Technology Market Size & Trend Analysis, by Disease, 2018 to 2030 (USD Million)
7.4. Gastrointestinal Disorders
7.4.1. Gastrointestinal Disorders Market Size & Forecasts and Trend Analyses, 2018 to 2030, (USD Million)
7.5. Autoimmune Disorder
7.5.1. Autoimmune Disorder Market Size & Forecasts and Trend Analyses, 2018 to 2030, (USD Million)
7.6. Cancer
7.6.1. Cancer Market Size & Forecasts and Trend Analyses, 2018 to 2030, (USD Million)
7.7. Others
7.7.1. Others Market Size & Forecasts and Trend Analyses, 2018 to 2030, (USD Million)
Chapter 8. North America Microbiome Sample Preparation Technology Market: End Use Estimates & Trend Analysis
8.1. End Use Segment Dashboard
8.2. North America Microbiome Sample Preparation Technology Market End Use Movement Analysis
8.3. North America Microbiome Sample Preparation Technology Market Size & Trend Analysis, by End Use, 2018 to 2030 (USD Million)
8.4. Diagnostic Labs
8.4.1. Diagnostic Labs Market Size & Forecasts and Trend Analyses, 2018 to 2030, (USD Million)
8.5. Pharmaceutical & Biotechnology
8.5.1. Pharmaceutical & Biotechnology Market Size & Forecasts and Trend Analyses, 2018 to 2030, (USD Million)
8.6. Others
8.6.1. Others Market Size & Forecasts and Trend Analyses, 2018 to 2030, (USD Million)
Chapter 9. North America Microbiome Sample Preparation Technology Market: Country Estimates & Trend Analysis
9.1. Country Market Share Analysis, 2024 & 2030
9.2. Country Market Dashboard
9.3. U.S.
9.3.1. Key country dynamics
9.3.2. Regulatory framework
9.3.3. Competitive scenario
9.3.4. U.S. market estimates and forecasts 2018 to 2030, (USD Million)
9.4. Canada
9.4.1. Key country dynamics
9.4.2. Regulatory framework
9.4.3. Competitive scenario
9.4.4. Canada market estimates and forecasts 2018 to 2030, (USD Million)
9.5. Mexico
9.5.1. Key country dynamics
9.5.2. Regulatory framework
9.5.3. Competitive scenario
9.5.4. Mexico market estimates and forecasts 2018 to 2030, (USD Million)
Chapter 10. Competitive Landscape
10.1. Participant Categorization
10.2. Company Market Position Analysis, 2024
10.3. Strategy Mapping
10.4. Participants Overview
10.4.1. QIAGEN
10.4.1.1. Company overview
10.4.1.2. Financial performance
10.4.1.3. Product benchmarking
10.4.1.4. Strategic initiatives
10.4.2. BGI
10.4.2.1. Company overview
10.4.2.2. Financial performance
10.4.2.3. Product benchmarking
10.4.2.4. Strategic initiatives
10.4.3. Bio-Rad Laboratories, Inc.
10.4.3.1. Company overview
10.4.3.2. Financial performance
10.4.3.3. Product benchmarking
10.4.3.4. Strategic initiatives
10.4.4. Perkin Elmer, Inc.
10.4.4.1. Company overview
10.4.4.2. Financial performance
10.4.4.3. Product benchmarking
10.4.4.4. Strategic initiatives
10.4.5. Agilent Technologies Inc.
10.4.5.1. Company overview
10.4.5.2. Financial performance
10.4.5.3. Product benchmarking
10.4.5.4. Strategic initiatives
10.4.6. Illumina, Inc.
10.4.6.1. Company overview
10.4.6.2. Financial performance
10.4.6.3. Product benchmarking
10.4.6.4. Strategic initiatives
10.4.7. F. Hoffmann-La Roche Ltd.
10.4.7.1. Company overview
10.4.7.2. Financial performance
10.4.7.3. Product benchmarking
10.4.7.4. Strategic initiatives
10.4.8. Danaher Corporation
10.4.8.1. Company overview
10.4.8.2. Financial performance
10.4.8.3. Product benchmarking
10.4.8.4. Strategic initiatives
List of Tables
Table 1 List of abbreviations
Table 2 North America Microbiome Sample Preparation Technology Market, by Country, 2018-2030 (USD Million)
Table 3 North America Microbiome Sample Preparation Technology Market, by Product, 2018-2030 (USD Million)
Table 4 North America Microbiome Sample Preparation Technology Market, by Workflow, 2018-2030 (USD Million)
Table 5 North America Microbiome Sample Preparation Technology Market, by Application, 2018-2030 (USD Million)
Table 6 North America Microbiome Sample Preparation Technology Market, by Disease, 2018-2030 (USD Million)
Table 7 North America Microbiome Sample Preparation Technology Market, by End Use, 2018-2030 (USD Million)
Table 8 U.S. Microbiome Sample Preparation Technology Market, by Product, 2018-2030 (USD Million)
Table 9 U.S. Microbiome Sample Preparation Technology Market, by Workflow, 2018-2030 (USD Million)
Table 10 U.S. Microbiome Sample Preparation Technology Market, by Application, 2018-2030 (USD Million)
Table 11 U.S. Microbiome Sample Preparation Technology Market, by Disease, 2018-2030 (USD Million)
Table 12 U.S. Microbiome Sample Preparation Technology Market, by End Use, 2018-2030 (USD Million)
Table 13 Canada Microbiome Sample Preparation Technology Market, by Product, 2018-2030 (USD Million)
Table 14 Canada Microbiome Sample Preparation Technology Market, by Workflow, 2018-2030 (USD Million)
Table 15 Canada Microbiome Sample Preparation Technology Market, by Application, 2018-2030 (USD Million)
Table 16 Canada Microbiome Sample Preparation Technology Market, by Disease, 2018-2030 (USD Million)
Table 17 Canada Microbiome Sample Preparation Technology Market, by End Use, 2018-2030 (USD Million)
Table 18 Mexico Microbiome Sample Preparation Technology Market, by Product, 2018-2030 (USD Million)
Table 19 Mexico Microbiome Sample Preparation Technology Market, by Workflow, 2018-2030 (USD Million)
Table 20 Mexico Microbiome Sample Preparation Technology Market, by Application, 2018-2030 (USD Million)
Table 21 Mexico Microbiome Sample Preparation Technology Market, by Disease, 2018-2030 (USD Million)
Table 22 Mexico Microbiome Sample Preparation Technology Market, by End Use, 2018-2030 (USD Million)
List of Figures
Figure 1 Market Research Process
Figure 2 Data Triangulation Techniques
Figure 3 Primary Research Pattern
Figure 4 Market Research Approaches
Figure 5 Value-Chain-Based Sizing & Forecasting
Figure 6 QFD Modeling for Market Share Assessment
Figure 7 Market formulation & Validation
Figure 8 North America Microbiome Sample Preparation Technology Market: Market Outlook
Figure 9 Parent Market Outlook
Figure 10 Related/Ancillary Market Outlook
Figure 11 Penetration and Growth Prospect Mapping
Figure 12 Industry Value Chain Analysis
Figure 13 North America Microbiome Sample Preparation Technology Market Driver Impact
Figure 14 North America Microbiome Sample Preparation Technology Market Restraint Impact
Figure 15 North America Microbiome Sample Preparation Technology Market Strategic Initiatives Analysis
Figure 16 North America Microbiome Sample Preparation Technology Market: Product Movement Analysis
Figure 17 North America Microbiome Sample Preparation Technology Market: Product Outlook and Key Takeaways
Figure 18 North America Microbiome Sample Preparation Technology Market Estimates and Forecast, 2018-2030 (USD Million)
Figure 19 Consumables Market Estimates and Forecast, 2018-2030 (USD Million)
Figure 20 Purification/Extraction Kits Market Estimates and Forecast, 2018-2030 (USD Million)
Figure 21 Library prep kits Market Estimates and Forecast, 2018-2030 (USD Million)
Figure 22 DNA Library Preparation Kits Market Estimates and Forecast, 2018-2030 (USD Million)
Figure 23 RNA Library Preparation Kits Market Estimates and Forecast, 2018-2030 (USD Million)
Figure 24 Library Quantitation & Amplification kits Market Estimates and Forecast, 2018-2030 (USD Million)
Figure 25 Clean-up and Selection Kits Market Estimates and Forecast, 2018-2030 (USD Million)
Figure 26 Microbiome DNA Enrichment Market Estimates and Forecast, 2018-2030 (USD Million)
Figure 27 Others Market Estimates and Forecast, 2018-2030 (USD Million)
Figure 28 Instruments Market Estimates and Forecast, 2018-2030 (USD Million)
Figure 29 Workstation Market Estimates and Forecast, 2018-2030 (USD Million)
Figure 30 Extraction System Market Estimates and Forecast, 2018-2030 (USD Million)
Figure 31 Liquid Handling Instrument Market Estimates and Forecast, 2018-2030 (USD Million)
Figure 32 Other Sample Preparation Instruments Market Estimates and Forecast, 2018-2030 (USD Million)
Figure 33 North America Microbiome Sample Preparation Technology Market: Workflow Movement Analysis
Figure 34 North America Microbiome Sample Preparation Technology Market: Workflow Outlook and Key Takeaways
Figure 35 Sample Extraction/Isolation Market Estimates and Forecasts, 2018-2030 (USD Million)
Figure 36 Library Preparation Market Estimates and Forecasts, 2018-2030 (USD Million)
Figure 37 Sample Quantification Market Estimates and Forecasts, 2018-2030 (USD Million)
Figure 38 Fragmentation Market Estimates and Forecasts, 2018-2030 (USD Million)
Figure 39 Target Enrichment Market Estimates and Forecasts, 2018-2030 (USD Million)
Figure 40 Quality Control Market Estimates and Forecasts, 2018-2030 (USD Million)
Figure 41 Pooling Market Estimates and Forecasts, 2018-2030 (USD Million)
Figure 42 Library Quantification Market Estimates and Forecasts, 2018-2030 (USD Million)
Figure 43 North America Microbiome Sample Preparation Technology Market: Application Movement Analysis
Figure 44 North America Microbiome Sample Preparation Technology Market: Application Outlook and Key Takeaways
Figure 45 DNA Sequencing Market Estimates and Forecasts, 2018-2030 (USD Million)
Figure 46 RNA Sequencing Market Estimates and Forecasts, 2018-2030 (USD Million)
Figure 47 Methylation Sequencing Market Estimates and Forecasts, 2018-2030 (USD Million)
Figure 48 Single Cell Sequencing Market Estimates and Forecasts, 2018-2030 (USD Million)
Figure 49 Whole-Genome Sequencing Market Estimates and Forecasts, 2018-2030 (USD Million)
Figure 50 Metagenomics Market Estimates and Forecasts, 2018-2030 (USD Million)
Figure 51 Others Market Estimates and Forecasts, 2018-2030 (USD Million)
Figure 52 North America Microbiome Sample Preparation Technology Market: Disease Movement Analysis
Figure 53 North America Microbiome Sample Preparation Technology Market: Disease Outlook and Key Takeaways
Figure 54 Gastrointestinal Disorders Market Estimates and Forecasts, 2018-2030 (USD Million)
Figure 55 Autoimmune Disorder Market Estimates and Forecasts, 2018-2030 (USD Million)
Figure 56 Cancer Market Estimates and Forecasts, 2018-2030 (USD Million)
Figure 57 Others Market Estimates and Forecasts, 2018-2030 (USD Million)
Figure 58 North America Microbiome Sample Preparation Technology Market: End Use Movement Analysis
Figure 59 North America Microbiome Sample Preparation Technology Market: End Use Outlook and Key Takeaways
Figure 60 Diagnostic Labs Market Estimates and Forecasts, 2018-2030 (USD Million)
Figure 61 Pharmaceutical & Biotechnology Market Estimates and Forecasts, 2018-2030 (USD Million)
Figure 62 Others Market Estimates and Forecasts, 2018-2030 (USD Million)
Figure 63 North America Microbiome Sample Preparation Technology Market: Country Movement Analysis
Figure 64 North America Microbiome Sample Preparation Technology Market: Country Outlook and Key Takeaways
Figure 65 North America Market Estimates and Forecasts, 2018-2030 (USD Million)
Figure 66 U.S. Country Dynamics
Figure 67 U.S. Market Estimates and Forecasts, 2018-2030 (USD Million)
Figure 68 Canada Country Dynamics
Figure 69 Canada Market Estimates and Forecasts, 2018-2030 (USD Million)
Figure 70 Mexico Country Dynamics
Figure 71 Mexico Market Estimates and Forecasts, 2018-2030 (USD Million)

Companies Mentioned

The major companies featured in this North America Microbiome Sample Preparation Technology market report include:
  • QIAGEN
  • BGI
  • Perkin Elmer, Inc.
  • Agilent Technologies Inc.
  • Illumina, Inc.
  • F. Hoffmann-La Roche Ltd.

Table Information